The genetic architecture of vitiligo

Vitiligo is an autoimmune disease in which destruction of skin melanocytes results in patches of white skin and hair. Genome‐wide linkage studies and genome‐wide association studies in European ancestry cases identified over 50 vitiligo susceptibility loci, defining a model of melanocyte‐directed autoimmunity. Vitiligo heritability is exceedingly high, ~2/3 coming from common and ~1/3 from rare genomic variants; ~20% of vitiligo risk is environmental. Vitiligo genetic risk is polygenic, with greater additive risk in multiplex vitiligo families than simplex cases. Vitiligo age‐of‐onset is bimodal, also involving a major genetic component; a MHC enhancer haplotype confers extreme risk for vitiligo (OR 8.1) and early disease onset, increasing expression of HLA‐DQB1 mRNA and HLA‐DQ protein and thus perhaps facilitating presentation of triggering antigens. Vitiligo triggering also involves a major environmental component; dramatic delay in vitiligo age‐of‐onset, especially from 1973 to 2004, suggests that exposure or response to a key vitiligo environmental trigger diminished during this period. Together, these findings provide deep understanding of vitiligo pathogenesis and genetic architecture, suggesting that vitiligo represents a tractable model for investigating complex disease genetic architecture and predictive aspects of personalized medicine.     

Roles of BdUNICULME4 and BdLAXATUM‐A in the non‐domesticated grass Brachypodium distachyon

In cultivated grasses, tillering, spike architecture and seed shattering represent major agronomical traits. In barley, maize and rice, the NOOT‐BOP‐COCH‐LIKE (NBCL) genes play important roles in development, especially in ligule development, tillering and flower identity. However, compared with dicots, the role of grass NBCL genes is underinvestigated. To better understand the role of grass NBCLs and to overcome any effects of domestication that might conceal their original functions, we studied TILLING nbcl mutants in the non‐domesticated grass Brachypodium distachyon. In B. distachyon, the NBCL genes BdUNICULME4 (CUL4) and BdLAXATUM‐A (LAXA) are orthologous, respectively, to the barley HvUniculme4 and HvLaxatum‐a, to the maize Zmtassels replace upper ears1 and Zmtassels replace upper ears2 and to the rice OsBLADE‐ON‐PETIOLE1 and OsBLADE‐ON‐PETIOLE2/3. In B. distachyon, our reverse genetics study shows that CUL4 is not essential for the establishment of the blade–sheath boundary but is necessary for the development of the ligule and auricles. We report that CUL4 also exerts a positive role in tillering and a negative role in spikelet meristem activity. On the other hand, we demonstrate that LAXA plays a negative role in tillering, positively participates in spikelet development and contributes to the control of floral organ number and identity. In this work, we functionally characterized two new NBCL genes in a context of non‐domesticated grass and highlighted original roles for grass NBCL genes that are related to important agronomical traits.     

栓皮栎根系解剖结构、水力特性及碳、氮含量研究

为阐明栓皮栎根系随径级的变化规律,探究其细根的合理划分标准。以1年生栓皮栎幼苗为研究对象,将其根系分为1、1～2、2～3、3～4 mm四个径级,分别制作石蜡切片观察解剖结构,比较木质部水力特性,测定碳氮含量及其比值,并采用主成分法对根系进行分类。结果表明:(1)随着径级增加,栓皮栎根系周皮、韧皮部和形成层组织厚度增加而占径比降低,木质部直径及其占径比均增加。(2)直径2 mm以上的栓皮栎根系木质部平均最大和最小导管直径、根比导水率和栓塞脆弱性指数增加显著; 而导管密度显著下降,导管面积与木质部面积之比变化不显著。(3)直径2 mm以上栓皮栎根系碳含量表现出显著增加,随着径级增加,根系氮含量下降、碳氮比升高。(4)主成分分析表明,13项根系结构和元素含量指标降维后,前2个主分量方差贡献率达62%,PCA双序轴显示栓皮栎根系可划分为2 mm以下的吸收根群和2 mm以上的运输根群。综上认为,以2 mm作为栓皮栎细根划分的标准兼顾了形态和功能的特点,更具有准确性。     

Recognizing pulses of extinction from clusters of last occurrences

The distribution of last occurrences of fossil taxa in a stratigraphic column are used to infer the pattern, timing and tempo of extinction from the fossil record. Clusters of last occurrences are commonly interpreted as an abrupt pulse of extinction. However, stratigraphic architecture alone can produce clusters of last occurrences that can be misinterpreted as an extinction pulse. These clusters will typically occur in strata that immediately underlie facies changes and sequence‐stratigraphic surfaces. It has been proposed that a basin‐wide analysis of the fossil record within a sequence‐stratigraphic framework can be used to distinguish between clusters of last occurrences caused solely by extinction pulses from those generated by sequence‐stratigraphic architecture. A basin‐wide approach makes it possible to observe lateral facies shifts in response to sea‐level change, mitigating the effects of stratigraphic architecture. Using computer simulations of plausible Late Ordovician mass‐extinction scenarios tuned to an inferred Late Ordovician sea‐level curve, we show that stratigraphically‐generated clusters of last occurrences are observed even in basin‐wide analyses of the simulated fossil records due to the basin‐wide loss of preferred facies for many taxa. Nonetheless, we demonstrate that by coarsening the stratigraphic resolution to the systems‐tract level and identifying facies preferences of simulated taxa, we can filter out taxa whose last occurrences coincide with the basin‐wide loss of their preferred facies. This enables consistent identification of the underlying extinction pattern for a wide variety of extinction scenarios. Applying this approach to empirical field data can help to constrain underlying extinction patterns from the fossil record.     

华北低山丘陵区常用树种木质部解剖特征及水其力学抗旱性

木本植物木质部解剖特征与水分运输和干旱适应策略密切相关,但目前对华北低山丘陵区常用树种这方面的研究仍然不足。为研究这一地区植物木质部解剖特征与抗旱性的关系,研究以抗旱树种和非抗旱树种各5种为研究对象,通过测定与木质部横截面导管、薄壁组织相关的大量解剖学性状和非结构性碳浓度,比较两类树种木质部解剖特征的差异和解剖性状间的关联,以探究这些树种水力学的干旱适应策略差异。结果显示:1)10个树种的16个木质部性状均有较大变异性;2)两类树种间的平均导管直径和导管密度无显著差异,但抗旱树种导管壁厚度、最大导管直径、旁管薄壁组织比例和轴向薄壁组织比例以及非结构性碳(NSC)浓度显著大于非抗旱树种;3)抗旱树种的导管壁厚度与平均导管直径、最大导管直径和潜在最大导水率均呈显著正相关关系,最大导管直径与潜在最大导水率呈显著正相关关系,但非抗旱树种不存在这些关系。本研究抗旱树种同时具有较大的最大导管直径和较厚的导管壁,在保证较高的水分运输效率的同时又具备一定的抗栓塞能力,较多的旁管薄壁组织和NSC也为抗旱树种提供了更大的木质部水储存和栓塞修复能力。     

地下水位对黄河三角洲柽柳根系生长的影响

为揭示黄河三角洲柽柳根系生长特征对地下水位的响应规律,明确柽柳生长适宜的地下水位,在咸水矿化度（6 g/L）下,模拟设置0、0.3、0.6、0.9、1.2、1.5、1.8 m共7个地下水位。测定分析栽植柽柳土柱的水盐参数与根系生长指标。结果表明：在咸水矿化度下,地下水位可显著影响土壤水盐变化,从而影响柽柳根系的生长。随地下水位的降低,土壤含水量、含盐量和土壤溶液绝对浓度显著降低。在高水位（≤0.6 m）下,柽柳根系生长受水盐胁迫影响显著,柽柳根长、根径、侧根数、总生物量、侧根生物量、根系连接长度均较低,拓扑结构呈叉状分支;中水位（0.9 m）时,土壤水盐条件适宜,柽柳侧根数、根径、二级侧根和毛细根生物量达到最大值,拓扑结构由叉状分支向鱼尾形分支过渡;低水位（≥1.2 m）下,土壤水盐含量低,柽柳根系总生物量、主根生物量、一级侧根生物量和根系平均连接长度在1.2 m水位达到最大值后降低,拓扑结构呈鱼尾形分支。柽柳根系生长与地下水位密切相关,柽柳通过改变根系生长和调整构型来适应不同土壤水盐和地下水位条件。高水位（≤0.6 m）下柽柳以降低根系生长深度,增加分叉,调配各组织器官的生物量来适应水盐胁迫;中水位0.9 m下土壤水盐条件最适宜柽柳生长;低水位（≥1.2 m）下柽柳主要受土壤干旱胁迫而使根系向下生长,增加根系连接长度,以此扩大资源获取效率。柽柳根系生长及根系构型对咸水矿化度下不同地下水位表现出较强的适应性和可塑性。     

3D chromatin architecture and epigenetic regulation in cancer stem cells

Dedifferentiation of cell identity to a progenitor-like or stem cell-like state with increased cellular plasticity is frequently observed in cancer formation.During this process,a subpopulation of cells in tumours acquires a stem cell-like state partially resembling to naturally occurring pluripotent stem cells that are temporarily present during early embryogenesis.Such characteris-tics allow these cancer stem cells (CSCs) to give rise to the whole tumour with its entire cellular heterogeneity and thereby support metastases formation while being resistant to current cancer therapeutics.Cancer devel-opment and progression are demarcated by transcrip-tional dysregulation.In this article,we explore the epigenetic mechanisms shaping gene expression dur-ing tumorigenesis and cancer stem cell formation,with an emphasis on 3D chromatin architecture.Comparing the pluripotant stem cell state and epigenetic repro-gramming to dedifferentiation in cellular transformation provides intriguing insight to chromatin dynamics.We suggest that the 3D chromatin architecture could be used as a target for re-sensitizing cancer stem cells to therapeutics.     

自然和人工生境被子植物枝木质部结构与功能差异

水是植物生存与生长的基础条件, 水分有效性影响植物木质部解剖结构、水力功能, 使之形成特定的适应特征。因此, 对比自然与人工生境中同一植物的水力功能与解剖结构差异, 有助于理解植物对水分环境的适应机理。该研究以湿润区三角槭(Acer buergerianum)、青冈(Cyclobalanopsis glauca)和女贞(Ligustrum lucidum)为研究材料, 对比分析了自然和人工生境中各物种的栓塞抗性(导水率损失50%时的水势(P₅₀))、输水效率(比导率(K_s))和解剖结构(导管直径(D)、导管壁厚(T)、导管密度(N)、木质部密度(WD)、厚度跨度比(t/b)²)特征, 探究了同生境种内与跨生境、跨物种水平的效率-安全权衡关系, 量化分析了水力功能与解剖结构的关系。结果发现: 1) 3种被子植物在自然生境中K_s更大, P₅₀更小, 与其更大的D、更小的(t/b)²有关。2)同生境种内K_s与P₅₀不存在权衡。3)功能性状和解剖结构相关分析表明: 同生境种内D与P₅₀不存在显著的相关关系; 除自然生境女贞外, T、(t/b)²均与P₅₀正相关。相对于人工生境, 在水分有效性低或无额外浇灌的自然生境中, 植物通过增大导管直径显著提高其输水效率, 从而避免水势下降、降低潜在栓塞风险。     

八个树种叶水力性状对水分条件的响应及其驱动因素

树木叶片的水力效率和安全性会对水分条件的改变做出一定的响应, 进而影响树木的生长和分布, 然而叶导水率(K_leaf)和叶水力脆弱性(P₅₀)对不同水分条件的响应模式及其影响因素尚不清楚。该研究选取了晋西北关帝山和黑茶山两种水分条件下的8种树种, 测量其水力性状、叶片导管和形态性状, 比较两地不同树种的K_leaf和P₅₀的变化, 分析叶片水力效率和安全性之间的权衡关系, 并探讨叶片水力性状在不同树种及水分条件下的响应模式及其驱动因素。结果表明: 对同一树种而言, 湿润的关帝山叶最大导水率(K_max)和P₅₀均高于干旱的黑茶山; 对同一地区而言, 从在高水分条件下生长的树种到在易干旱环境生长的树种, K_max和P₅₀均逐渐下降。K_max、P₅₀、膨压丧失点水势(TLP)之间均存在显著相关关系。两地叶片P₅₀与导管密度、导管塌陷预测值((t/b)³)、叶片厚度、比叶质量显著正相关, 与导管直径、叶面积显著负相关, 不同树种的K_leaf和P₅₀与叶导管性状的关系大于叶形态性状。同一树种的关帝山到黑茶山P₅₀变化量(δP₅₀)与比叶质量和叶干物质含量在两地的变化量显著正相关, 同一树种δP₅₀与叶形态性状变化量的关系大于与叶导管性状的。以上结果表明: 随着水分条件变差, 叶片水力效率降低, 水力安全性提高, 不同树种叶片水力效率与安全性之间存在一定的权衡关系, 不同树种叶水力性状的差别受叶导管性状影响的程度大于受叶形态性状的影响, 同一树种叶水力安全性对水分条件变化的响应主要依靠叶形态性状的驱动, 树木在提高自身叶水力安全的同时增加了叶构建的碳投资。